bioinformatics

Protein Graph Library

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

A cross-platform, efficient and practical CSV/TSV toolkit in Golang

A cross-platform command-line tool for executing jobs in parallel

🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.

An AI co-scientist running on your desktop. Claude Science but better.

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

Robust, flexible and resource-efficient pipelines using Go and the commandline

Open-source, local-first desktop AI research workbench for scientific computing with Python/R, MCP bioinformatics tools, SSH/WSL/GPU runtimes, and OpenAI/Anthropic models.

A plotly.js React component from Plotly 📈

Scripts to download genomes from the NCBI FTP servers

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

Cloud-native genomic dataframes and batch computing

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

A comprehensive library for computational molecular biology

C library for high-throughput sequencing data formats

Empower Large Language Models (LLM) using Knowledge Graph based Retrieval-Augmented Generation (KG-RAG) for knowledge intensive tasks

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

Python library to facilitate genome assembly, annotation, and comparative genomics

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

🔬🦞 A self-evolving AI research colleague for scientists. 285 skills, zero hallucination, persistent memory.

A curated list of Cheminformatics libraries and software.

The next version of bwa-mem

Specification for the Workflow Description Language (WDL).

Precision Medicine Knowledge Graph (PrimeKG)

Plant phenotyping with image analysis

A fast and sensitive gapped read aligner

Bioinformatics containers

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more