medical-imaging

A set of common support code for medical imaging, surgical navigation, and related purposes.

Medical SAM 2: Segment 3D Medical Images Via Segment Anything Model 2

tracking medical datasets, with a focus on medical imaging

MONAI Label is an intelligent open source image labeling and learning tool.

A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.

A medical imaging framework for Pytorch

DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

The Medical Imaging Interaction Toolkit.

"Structure-Aware Sparse-View X-ray 3D Reconstruction" (CVPR 2024) - A Toolbox for CT reconstruction and X-ray Novel View Synthesis

DeepInverse: a PyTorch library for solving imaging inverse problems using deep learning

3D medical imaging reconstruction software

Automated lung segmentation in CT

[MICCAI 2019 Young Scientist Award] [MedIA Best Paper Award] Models Genesis: self-supervised pre-training for 3D medical images. Learns transferable representations from unlabeled CT and MRI volumes, then fine-tunes for downstream segmentation and classification. Keras and PyTorch weights included.

Vision Foundation Models for Medical AI, including RETFound, DINOv2, DINOv3

nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.

Kaggle datascience bowl 2017

[Deprecated] Use Cornerstone3D Instead https://cornerstonejs.org/

Rust implementation of the DICOM standard

Image augmentation for computer vision. AGPL-3.0-only or commercial licensing.

Brainchop: In-browser 3D MRI rendering and segmentation

Dicoogle - Open Source PACS

[MICCAI 2023] MedNeXt is a fully ConvNeXt architecture for 3D medical image segmentation.

Vision-Language Pathology Foundation Model - Nature Medicine

A framework for high-performance medical image processing, neural network inference and visualization

OSS Implementation of DICOMweb standard