single-cell
Tracked open-source repos tagged single-cell, sorted by stars.
Related topics
Topics that frequently appear alongside single-cell on the same repo.
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Repos created in the last 90 days, tagged single-cell.
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- #1
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
★ 3,844+4Star change over the last 7 days - #2
Hundreds of agent skills for medical research, including protocol design, data analysis, evidence insights, and academic writing.
★ 1,798+33Star change over the last 7 days - #3★ 1,621+1Star change over the last 7 days
- #4
https://www.sc-best-practices.org
★ 1,258+4Star change over the last 7 days - #5
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
★ 1,193+3Star change over the last 7 days - #6
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
★ 928+1Star change over the last 7 days - #7
A list of scRNA-seq analysis tools
★ 814+1Star change over the last 7 days - #8
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
★ 674+1Star change over the last 7 days - #9
Cell type annotation for single-cell RNA-seq using multi-LLM consensus
★ 659+0Star change over the last 7 days - #10
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
★ 634+1Star change over the last 7 days - #11
PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.
★ 559+1Star change over the last 7 days - #12
A collection of awesome things regarding all omics.
★ 503+1Star change over the last 7 days - #13
A tool for semi-automatic cell type classification
★ 502+0Star change over the last 7 days
