Topic · rna-seq

rna-seq

Tracked open-source repos tagged rna-seq, sorted by stars.

Repos

8

Total stars

7,695

Avg. stars

962

Share

0.00%

Topics that frequently appear alongside rna-seq on the same repo.

Recent risers

Repos created in the last 90 days, tagged rna-seq.

No new repos tagged with this topic in the last 90 days.

#1
rnaseq ↗@nf-coreNextflow
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
★ 1,359+4Star change over the last 7 days
#2
single-cell-best-practices ↗@theislabJupyter Notebook
https://www.sc-best-practices.org
★ 1,256+4Star change over the last 7 days
#3
gget ↗@scversePython
🧬 gget enables efficient querying of genomic reference databases
★ 1,195+2Star change over the last 7 days
#4
salmon ↗@COMBINE-labRust
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
★ 927+1Star change over the last 7 days
#5
kallisto ↗@pachterlabC
Near-optimal RNA-Seq quantification
★ 769+0Star change over the last 7 days
#6
deepTools ↗@deeptoolsPython
Tools to process and analyze deep sequencing data.
★ 763+0Star change over the last 7 days
#7
PyDESeq2 ↗@scversePython
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
★ 760+0Star change over the last 7 days
#8
nichenetr ↗@saeyslabR
NicheNet: predict active ligand-target links between interacting cells
★ 674+0Star change over the last 7 days

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