Topic · transcriptomics

transcriptomics

Tracked open-source repos tagged transcriptomics, sorted by stars.

Repos

7

Total stars

7,595

Avg. stars

1,085

Share

0.00%

Topics that frequently appear alongside transcriptomics on the same repo.

Recent risers

Repos created in the last 90 days, tagged transcriptomics.

No new repos tagged with this topic in the last 90 days.

#1
scanpy ↗@scversePython
Single-cell analysis in Python. Scales to >100M cells.
★ 2,551+6Star change over the last 7 days
#2
gget ↗@scversePython
🧬 gget enables efficient querying of genomic reference databases
★ 1,195+2Star change over the last 7 days
#3
nucleotide-transformer ↗@instadeepaiJupyter Notebook
Foundation Models for Genomics & Transcriptomics
★ 915+4Star change over the last 7 days
#4
cellxgene ↗@chanzuckerbergJavaScript
An interactive explorer for single-cell transcriptomics data
★ 785+2Star change over the last 7 days
#5
anndata ↗@scversePython
Annotated data.
★ 768+3Star change over the last 7 days
#6
PyDESeq2 ↗@scversePython
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
★ 760+0Star change over the last 7 days
#7
pySCENIC ↗@aertslabPython
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
★ 633-1Star change over the last 7 days

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