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Topic · genomics

genomics

Tracked open-source repos tagged genomics, sorted by stars.

Repos
36
Total stars
84,367
Avg. stars
2,344
Share
0.00%

Related topics

Topics that frequently appear alongside genomics on the same repo.

Recent risers

Repos created in the last 90 days, tagged genomics.

No new repos tagged with this topic in the last 90 days.

  • scientific-agent-skills↗@K-Dense-AI

    Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 190,000+ scientists worldwide. 165 ready-to-use validated skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.

    ★ 42,131+7,305Star change over the last 7 days
  • biopython↗@biopython

    Official git repository for Biopython (originally converted from CVS)

    ★ 5,185+9Star change over the last 7 days
  • deepvariant↗@google

    DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

    ★ 3,801+10Star change over the last 7 days
  • minimap2↗@lh3

    A versatile pairwise aligner for genomic and spliced nucleotide sequences

    ★ 2,244+2Star change over the last 7 days
  • gatk↗@broadinstitute

    Official code repository for GATK versions 4 and up

    ★ 1,994+2Star change over the last 7 days
  • galaxy↗@galaxyproject

    Data intensive science for everyone.

    ★ 1,845+4Star change over the last 7 days
  • medical-research-skills↗@aipoch

    Hundreds of agent skills for medical research, including protocol design, data analysis, evidence insights, and academic writing.

    ★ 1,798+33Star change over the last 7 days
  • bwa↗@lh3

    Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

    ★ 1,766+0Star change over the last 7 days
  • vg↗@vgteam

    tools for working with genome variation graphs

    ★ 1,334+1Star change over the last 7 days
  • mirobody↗@thetahealth

    The AI-native health data engine — collect, standardize, and reason over labs, wearables & genomics.

    ★ 1,224+164Star change over the last 7 days
  • gget↗@scverse

    🧬 gget enables efficient querying of genomic reference databases

    ★ 1,196+7Star change over the last 7 days
  • ClawBio↗@ClawBio

    🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.

    ★ 1,125+5Star change over the last 7 days
  • pyCirclize↗@moshi4

    Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

    ★ 1,119+5Star change over the last 7 days
  • ncbi-genome-download↗@kblin

    Scripts to download genomes from the NCBI FTP servers

    ★ 1,084+0Star change over the last 7 days
  • hail↗@hail-is

    Cloud-native genomic dataframes and batch computing

    ★ 1,070+0Star change over the last 7 days
  • adam↗@bigdatagenomics

    ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

    ★ 1,059+2Star change over the last 7 days
  • jcvi↗@tanghaibao

    Python library to facilitate genome assembly, annotation, and comparative genomics

    ★ 928-1Star change over the last 7 days
  • nucleotide-transformer↗@instadeepai

    Foundation Models for Genomics & Transcriptomics

    ★ 917+5Star change over the last 7 days
  • goatools↗@tanghaibao

    Python library to handle Gene Ontology (GO) terms

    ★ 908+2Star change over the last 7 days
  • dorado↗@nanoporetech

    Oxford Nanopore's Basecaller

    ★ 871+6Star change over the last 7 days
  • bwa-mem2↗@bwa-mem2

    The next version of bwa-mem

    ★ 862+2Star change over the last 7 days
  • bowtie2↗@BenLangmead

    A fast and sensitive gapped read aligner

    ★ 811+0Star change over the last 7 days
  • hifiasm↗@chhylp123

    Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

    ★ 810+2Star change over the last 7 days
  • hyena-dna↗@HazyResearch

    Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena

    ★ 806+0Star change over the last 7 days
  • eggnog-mapper↗@eggnogdb

    Fast genome-wide functional annotation through orthology assignment

    ★ 778+6Star change over the last 7 days
  • deepTools↗@deeptools

    Tools to process and analyze deep sequencing data.

    ★ 765+0Star change over the last 7 days
  • megahit↗@voutcn

    Ultra-fast and memory-efficient (meta-)genome assembler

    ★ 723+2Star change over the last 7 days
  • vcflib↗@vcflib

    C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

    ★ 684-1Star change over the last 7 days
  • biojava↗@biojava

    :book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data.

    ★ 631+1Star change over the last 7 days
  • biomcp↗@genomoncology

    BioMCP: Biomedical Model Context Protocol

    ★ 625+13Star change over the last 7 days
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