Topic · sequencing

sequencing

Tracked open-source repos tagged sequencing, sorted by stars.

Repos

6

Total stars

11,878

Avg. stars

1,980

Share

0.00%

Topics that frequently appear alongside sequencing on the same repo.

Recent risers

Repos created in the last 90 days, tagged sequencing.

No new repos tagged with this topic in the last 90 days.

#1
deepvariant ↗@googlePython
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
★ 3,799+10Star change over the last 7 days
#2
fastp ↗@OpenGeneC++
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
★ 2,423+3Star change over the last 7 days
#3
gatk ↗@broadinstituteJava
Official code repository for GATK versions 4 and up
★ 1,993+6Star change over the last 7 days
#4
galaxy ↗@galaxyprojectPython
Data intensive science for everyone.
★ 1,844+3Star change over the last 7 days
#5
spades ↗@ablabC++
SPAdes Genome Assembler
★ 956+1Star change over the last 7 days
#6
mosdepth ↗@brentpNim
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
★ 873+1Star change over the last 7 days

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